Metagenomics

Innovative tools for detection of plant pathogenic viruses and bacteria

Marı́a M. López, Edson Bertolini, Antonio Olmos, P. Caruso, M.T. Gorris, P. Llop, Ramón Penyalver, M. Cambra

Citations: 309 • 2003

High-throughput microbial culturomics using automation and machine learning

Yiming Huang, Ravi U. Sheth, Shijie Zhao, Lucas Cohen, Kendall Dabaghi, Thomas Moody, Yiwei Sun, Deirdre Ricaurte, Miles Richardson, Florencia Velez‐Cortes, Tomasz Blazejewski, Andrew Kaufman, Carlotta Ronda, Harris H. Wang

Citations: 244 • 2023

Comparison of Boiling and Robotics Automation Method in DNA Extraction for Metagenomic Sequencing of Human Oral Microbes

Junya Yamagishi, Yukuto Sato, Natsuko O. Shinozaki, Bin Ye, Akito Tsuboi, Masao Nagasaki, Riu Yamashita

Citations: 61 • 2016

Advancements in Predictive Microbiology: Integrating New Technologies for Efficient Food Safety Models

Oluseyi Rotimi Taiwo, Helen Onyeaka, Elijah Kolawole Oladipo, Julius Kola Oloke, Deborah C. Chukwugozie

Citations: 61 • 2024

Assessing high-throughput environmental DNA extraction methods for meta-barcode characterization of aquatic microbial communities

Abdolrazagh Hashemi Shahraki, Subba Rao Chaganti, Daniel D. Heath

Citations: 52 • 2018

Standardized high-throughput biomonitoring using DNA metabarcoding: Strategies for the adoption of automated liquid handlers

Dominik Buchner, Till‐Hendrik Macher, Arne J. Beermann, Marie‐Thérése Werner, Florian Leese

Citations: 50 • 2021

Novel Microbial Diversity Retrieved by Autonomous Robotic Exploration of the World's Deepest Vertical Phreatic Sinkhole

Jason W. Sahl, Nathaniel Fairfield, J. Kirk Harris, David Wettergreen, William C. Stone, John R. Spear

Citations: 39 • 2010

Multitable Methods for Microbiome Data Integration

Kris Sankaran, Susan Holmes

Citations: 37 • 2019

A Hybrid DNA Extraction Method for the Qualitative and Quantitative Assessment of Bacterial Communities from Poultry Production Samples

Michael J. Rothrock, Kelli L. Hiett, John Gamble, Andrew C. Caudill, K.M. Cicconi-Hogan, J. Gregory Caporaso

Citations: 29 • 2014

Strategy for screening metagenomic resources for exocellulase activity using a robotic, high-throughput screening system

Kyong‐Cheol Ko, Yunjon Han, Dae‐Eun Cheong, Jong Hyun Choi, Jae‐Jun Song

Citations: 24 • 2013

Crystal structure of engineered β‐glucosidase from a soil metagenome

Ki Hyun Nam, Soo‐Jin Kim, Minyoung Kim, Jae Hee Kim, Yunsoo Yeo, Chang‐Muk Lee, Hong‐Ki Jun, Kwang Yeon Hwang

Citations: 22 • 2008

Ultrahigh-Throughput Screening of Single-Cell Lysates for Directed Evolution and Functional Metagenomics

Fabrice Gielen, Pierre-Yves Colin, Philip Mair, Florian Hollfelder

Citations: 19 • 2017

Large Insert Environmental Genomic Library Production

Marcus Taupp, Sang‐Won Lee, Alyse K. Hawley, Jin‐Shu Yang, Steven Hallam

Citations: 18 • 2009

Plant Genomics

Ibrokhim Y. Abdurakhmonov

Citations: 18 • 2016

The<i>Helicobacter pylori</i>Genome — New Insights into Pathogenesis and Therapeutics

A. Lee

Citations: 18 • 1998

A low-cost genomics workflow enables isolate screening and strain-level analyses within microbiomes

Jon G. Sanders, Weiwei Yan, Deus Mjungu, Elizabeth V. Lonsdorf, John Hart, Crickette Sanz, David Morgan, Martine Peeters, Beatrice H. Hahn, Andrew H. Moeller

Citations: 17 • 2022

Emerging Technologies for the Discovery of Novel Diversity in Cyanobacteria and Algae and the Elucidation of Their Valuable Metabolites

Gabrielle Zammit, Maria G. Zammit, Kyle G. Buttigieg

Citations: 16 • 2023

Saliva microbiome profiling by full-gene 16S rRNA Oxford Nanopore Technology versus Illumina MiSeq sequencing

Anders Esberg, Niklas Fries, Simon Haworth, Ingegerd Johansson

Citations: 15 • 2024

A Hybrid DNA Extraction Method for the Qualitative and Quantitative Assessment of Bacterial Communities from Poultry Production Samples

Michael J. Rothrock, Kelli L. Hiett, John King Gamble, Andrew C. Caudill, K.M. Cicconi-Hogan, J. Gregory Caporaso

Citations: 15 • 2014

Translating virome analyses to support biosecurity, on-farm management, and crop breeding

Ricardo I. Alcalá-Briseño, Özgur Batuman, Jeremy Brawner, Wilmer J. Cuéllar, Erik Delaquis, Berea A. Etherton, R. D. French-Monar, Jan Kreuze, Israel Navarrete, Kwame Ogero, Aaron I. Plex Sulá, Salih Yılmaz, Karen A. Garrett

Citations: 14 • 2023